Section 139(9) of the Income Tax Act

Income-tax Act, 2025: s.263

Section 139(9) falls under section 139 of the Income-tax Act, 1961, which corresponds to section 263 (Return of income) of the Income-tax Act, 2025.

Read section 263 of the 2025 Act

Correspondence checked against the ICAI tabular mapping of the two Acts and the BharatTax.co section commentary.

The decision most relied on for Section 139(9) is CIT v. Merchant (280 CTR 381), cited in 68 of the 234 judgments on BharatTax that turn on this section.

Leading authorities on Section 139(9)

CIT v. Merchant
280 CTR 381 · 2015 · High Court
68
citing judgments

The scope of Section 43B and Section 36(1)(va) of the Income Tax Act are distinct, meaning they cannot be read together to determine an assessee's entitlement to a deduction for belatedly paid employee contributions.

Mahindra & Mahindra Ltd. vs. DCIT 313 ITR 263; Ramond Limited v. DCIT
315 ITR 72 · 2009 · High Court
47
citing judgments

Income is not taxable as Fees for Technical Services (FTS) if the services are not 'made available' to the recipient, according to the interpretation of Double Taxation Avoidance Agreements (DTAA). If a treaty lacks an FTS clause, income is taxable as business income only if a permanent establishment exists in India and the income is attributable to it.

DCIT v. PanAmSat International Systems Inc.
9 SOT 100 · 2006 · ITAT
35
citing judgments

Payment for transponder facility does not constitute royalty if it is not for a secret process and does not make technical knowledge available under a DTAA.

ITO v. Seth Bros. (SC)
74 ITR 836 · 1969 · Reported
24
citing judgments

Evidence collected during an illegal search can still be used against the assessee. An assessment made based on such evidence is valid.

Invensys Systems Inc. v. DI.T (AAR)
317 ITR 438 · 2009 · Reported
23
citing judgments

Payments for services are not taxable in India as Fees for Included Services (FIS) under a Double Taxation Avoidance Agreement (DTAA) if they do not make technical knowledge, know-how, or experience available to the Indian recipient.

CLSA Ltd. v. ITO(IT)
305 ITR 208 · 2008 · Reported
21
citing judgments

Payments received for referring international clients to another entity do not constitute 'fees for technical services' if they do not involve rendering technical, managerial, or consultancy services. Such fees may be construed as commission income.

DDIT (Exemptions) v. Petroleum Sports Promotion Board
362 ITR 235 · 2014 · High Court
14
citing judgments

Gross receipts cannot be taxed as income, and expenses must be allowed accordingly, even if exemption under Section 11 is denied. Income should be assessed under 'Income from Other Sources' with deductions under Section 57.

Calcutta Management Association v. ITO
42 ITD 62 · 1992 · ITAT
14
citing judgments

An Assessing Officer is not justified in rejecting a claim for exemption under section 11 of the Income-tax Act. The ITAT has also held that an opportunity of being heard need not be afforded under section 139(9) in certain circumstances.

S. Kumar Enterprises (Synfabs) Ltd. v. JCIT
170 TTJ 37 · 2015 · ITAT
12
citing judgments

Assessments under section 143(3) and 144 have distinct and different consequences. An assessment under section 143(3) involves reviewing the income tax return and requesting evidence of income and expenditures.

CIT v. Mahalaxmi Rice Factory
163 Taxmann 565 · 2007 · High Court
11
citing judgments

Judgments on Section 139(9)

Chetna, Sector-C vs. Assistant Director of Income Tax, Ram Tirath Marg

In the result, the appeal of the assessee is allowed

ITA 355/LKW/2026[2019-20]Status: DisposedITAT Lucknow25 May 2026AY 2019-20

Bench: Sh. Sudhanshu Srivastava & Sh. Nikhil Choudharya.Y. 2019-20 Chetna, Vs Assistant Director Of Income Tax Aliganj, Lucknow Pan: Aaatc1696A (Appellant) (Respondent) Assessee By: Sh. Akshay Agarwal, Adv Revenue By: Sh. Amit Kumar, Dr Date Of Hearing: 11.05.2026 Date Of Pronouncement: 25.05.2026 O R D E R Per Nikhil Choudhary, A.M.: This Is An Appeal Filed By The Assessee Against The Order Of The Ld. Addl /Jcit-3 (Appeals) Ahmedabad Under Section 250 Of The Income Tax Act, 1961 Dated 16.01.2026, Wherein The Ld. First Appellate Authority Has Dismissed The Appeal Of The Assessee Against The Order Passed By The Cpc Under Section 154 Of The Act For The A.Y. 2019-20, Passed On 14.02.2024. The Grounds Of Appeal Are As Under:- “1. That The Learned Commissioner Of Income Tax (Appeals) Has Erred In Confirming The Order Passed By The Assessing Officer Without Considering The Facts Of The Case. 2. That The Learned Commissioner Of Income Tax (Appeals) Has Wrongly Rejected The Exemption U/S 12A Saying That There Was No Valid & Timely Submitted Form 10B & Form No 10 On Record, Even The Form 10B (Audit Report) Was Submitted On 31/10/2019 Within The Prescribed Time & Form 10B (Audit Report) Available On Income Tax Portal. 3. That The Learned Commissioner Of Income Tax (Appeal) Has Also Not Given Any Finding About The Calculation Of Tax On Income Over Expenditure As Aop In Case Of Rejection Of Exemption U/S 12A. 4. That The Order Passed By The Commissioner Of Income Tax (Appeals) Is Against The Law & Principle Of Natural Justice. 1 A.Y. 2019-20 Chetna

For Appellant: Sh. Akshay Agarwal, AdvFor Respondent: Sh. Amit Kumar, DR
Section 11Section 11(2)Section 12ASection 12A(1)(b)Section 139Section 139(1)Section 143(1)Section 154Section 250